PanCake specifications

Information


Unique identifier OMICS_08617
Name PanCake
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
Numpy, BioPython
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Sven Rahmann

Publication for PanCake

PanCake citation

library_books

A Brief Review of Software Tools for Pangenomics

2015
PMCID: 4411478
PMID: 25721608
DOI: 10.1016/j.gpb.2015.01.007

[…] raction, homologous gene identification, pangenome profiling, graphical display, and phylogenetic tree construction into one powerful toolkit. Several other tools were also available in 2013, such as PanCake and PANNOTATOR . PanCake was developed for identifying singletons and core regions in arbitrary sequence sets, while PANNOTATOR, a web-based automated pipeline, was designed for the annotatio […]

PanCake institution(s)
Genome Informatics, Institute of Human Genetics, Faculty of Medicine University of Duisburg-Essen, Essen, Germany

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