Pancoregen pipeline

Pancoregen specifications


Unique identifier OMICS_22335
Name Pancoregen
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Sandip Paul <>
  • person_outline Archana Bhardwaj <>
  • person_outline Sumit Bag <>
  • person_outline Evgeni Sokurenko <>
  • person_outline Sujay Chattopadhyay <>

Publication for Pancoregen

Pancoregen IN pipeline

PMCID: 5867892
PMID: 29558450
DOI: 10.3390/genes9030171

[…] onto an initial seed genome. genbank files for three reference strains (f2365 seed genome, clip80459 and egd-e) were compared with the clinical and food/food processing environment isolates., pancoregen [36] was subsequently used to construct the pan-genomic database of orthogolous genes using the clinical and food associated isolates along with suitable references including f2365, […]

Pancoregen institution(s)
Department of Microbiology, University of Washington, Seattle, WA USA; CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow, India
Pancoregen funding source(s)
Supported by the National Institutes of Health (grant no. R01AI106007).

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