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PANDA specifications

Information


Unique identifier OMICS_10616
Name PANDA
Alternative name Pipeline for Analyzing braiN Diffusion imAges
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Gaolang Gong

Publication for Pipeline for Analyzing braiN Diffusion imAges

PANDA citations

 (38)
library_books

Divergent topological networks in Alzheimer’s disease: a diffusion kurtosis imaging analysis

2018
PMCID: 5921324
PMID: 29719719
DOI: 10.1186/s40035-018-0115-y

[…] e defined as FN, mean fiber length and mean diffusion measures, including FA, MD, Ad, RD, MK, RK, AK and KFA. All the image processes of kurtosis diffusion network construction were manipulated using PANDA (http://www.nitrc.org/projects/panda) [].Each correlation matrix was thresholded over a wide range of sparsity (6% -40%), and the properties of the resulting graphs at each threshold value were […]

library_books

The functional and structural characteristics of the emotion network in alexithymia

2018
PMCID: 5905825
PMID: 29695908
DOI: 10.2147/NDT.S154601

[…] The DTI data were processed using the Pipeline for Analyzing Brain Diffusion Images (PANDA, http://www.nitrc.org/projects/panda/) and DTI Studio (https://www.mristudio.org/). The DTI data procession included transferring Digital Imaging a […]

library_books

Subjective cognitive impairment and brain structural networks in Chinese gynaecological cancer survivors compared with age matched controls: a cross sectional study

2017
BMC Cancer
PMCID: 5704431
PMID: 29179739
DOI: 10.1186/s12885-017-3793-4

[…] The DTI images were preprocessed using PANDA: a pipeline toolbox for analysing brain diffusion images (https://www.nitrc.org/projects/panda/). Each individual’s DTI dataset was registered to the same individual’s high-resolution structural […]

library_books

Asymmetry of Hemispheric Network Topology Reveals Dissociable Processes between Functional and Structural Brain Connectome in Community Living Elders

2017
PMCID: 5701647
PMID: 29209197
DOI: 10.3389/fnagi.2017.00361

[…] Structural data preprocessing and brain network construction were conducted using the FMRIB Software Library (FSL, v5.0, Smith et al., ), diffusion toolkit (Wang et al., ), and PANDA (Cui et al., ) and has been described in detail previously (Sun et al., , ). Here we provide a brief description about the preprocessing steps.The distortion of diffusion-weighted images was cor […]

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Alternations of White Matter Structural Networks in First Episode Untreated Major Depressive Disorder with Short Duration

2017
PMCID: 5661170
PMID: 29118724
DOI: 10.3389/fpsyt.2017.00205
call_split See protocol

[…] In this study, DTI data preprocessing and brain network were performed using the PANDA toolbox () which was an integration analysis toolbox comprising the Diffusion Toolkit (), FMRIB Software Library (), MRIcron (), and Pipeline System for Octave and Matlab (PSOM) (). And the whol […]

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Weight Rich Club Analysis in the White Matter Network of Late Life Depression with Memory Deficits

2017
PMCID: 5572942
PMID: 28878666
DOI: 10.3389/fnagi.2017.00279
call_split See protocol

[…] cal and subcortical structures in each hemisphere. Edge definition was accomplished using the connectivity probability between each pair of nodes in the network. Network construction was performed by PANDA (Cui et al., ). The details of network construction were as follows. […]

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PANDA institution(s)
State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China

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