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panDB specifications


Unique identifier OMICS_23661
Name panDB
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Nicole Gay
  • person_outline Julia Oh
  • person_outline Wei Zhou

Publication for panDB

panDB citation


ReprDB and panDB: minimalist databases with maximal microbial representation

PMCID: 5774170
PMID: 29347966
DOI: 10.1186/s40168-018-0399-2

[…] ncing reads as possible with maximum efficiency and minimum computational cost. In this study, we described methods to efficiently and automatically compile two microbial genome databases, reprDB and panDB, both of which have manageable sizes and are suitable for analyzing mWGS data. The reference databases we compiled significantly promoted microbial species identification in human-associated mic […]

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panDB institution(s)
The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, USA; Stanford University, Stanford, CA, USA
panDB funding source(s)
Supported by National Institute of Health (K22 AI119231-01).

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