PanPhlAn specifications

Unique identifier:
OMICS_11368
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Name:
Pangenome-based Phylogenomic Analysis
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Bowtie2, Samtools

versioning

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PanPhlAn distribution

download

PanPhlAn support

Documentation

Maintainer

  • PanPhlAn Team <>

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Credits

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Publications

Institution(s)

Centre for Integrative Biology, University of Trento, Trento, Italy; Center for Microbiome Research, University of Massachusetts Medical School, Worcester, MA, USA; Department of Pediatrics, Perinatal Institute, Cincinnati, OH,USA

Funding source(s)

This work was supported by the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under contract number HHSN272200900018C. The work was also supported by the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement number PCIG13-GA-2013-618833, by startup funds from the Centre for Integrative Biology, University of Trento, by MIUR “Futuro in Ricerca” RBFR13EWWI_001, by the Fondazione Caritro–2013 and by ‘Terme di Comano’.

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