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Pan-genome data analysis software tools | Shotgun metagenomic sequencing

A pan-genome is defined as the set of all unique gene families found in one or more strains of a prokaryotic species. Due to the extensive within-species diversity in the microbial world, the pan-genome is often many times larger than a single genome. Studies of pan-genomes have become popular due to the easy access to whole-genome sequence data for prokaryotes. A pan-genome study reveals species diversity and gene families that may be of special interest, e.g because of their role in bacterial survival or their ability to discriminate strains.

Source text:
(Snipen et al., 2015) micropan: an R-package for microbial pan-genomics. BMC Bioinformatics.

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