Pan-genome data analysis software tools | Shotgun metagenomic sequencing
A pan-genome is defined as the set of all unique gene families found in one or more strains of a prokaryotic species. Studies of pan-genomes have become popular due to the easy access to whole-genome sequence data for prokaryotes. A pan-genome study reveals species diversity and gene families that may be of special interest, e.g because of their role in bacterial survival or their ability to discriminate strains. Pan-genome data analysis software tools are used to builds large-scale pan-genomes, identifications of core and accessory genes, de novo protein family prediction, and more.
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