PanGP protocols

PanGP specifications


Unique identifier OMICS_08614
Name PanGP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Jingfa Xiao <>

Publication for PanGP

PanGP IN pipeline

PMCID: 4971109
PMID: 27536275
DOI: 10.3389/fmicb.2016.01180

[…] salzberg, 2012). we downloaded trna copy number data for e. coli from gtrnadb (chan and lowe, 2016)., based on a total of 95,439 genes from 26 strains, we used orthomcl (fischer et al., 2011) and pangp (zhao et al., 2014) for pangenome analyses. as a result, we clustered all genes into 6797 clusters and further grouped the e. coli pangenome into five gene sets: strain-specific genes (that […]

PanGP institution(s)
CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China

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