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Pannoramic Viewer specifications

Information


Unique identifier OMICS_25775
Name Pannoramic Viewer
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Version 1.15.4
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Caseviewer Team

Pannoramic Viewer citations

 (3)
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A computational method for three dimensional reconstruction of the microarchitecture of myometrial smooth muscle from histological sections

2017
PLoS One
PMCID: 5354307
PMID: 28301486
DOI: 10.1371/journal.pone.0173404
call_split See protocol

[…] 5 μm per pixel, and slides from all other tissue samples were scanned at 0.371 μm×0.372 μm per pixel.The scanned slides were in Mirax format, and were converted into TIFF files using either the Mirax Pannoramic Viewer [] or a combination of Vips [], OpenSlide [], and bigTIFFTools []. The conversion produced a set of tiles of size 2048×2048 pixels for each slide, where each tile represented a squar […]

library_books

Myelinosome formation represents an early stage of oligodendrocyte damage in multiple sclerosis and its animal model

2016
Nat Commun
PMCID: 5116090
PMID: 27848954
DOI: 10.1038/ncomms13275

[…] nd cervical spinal cords. LFB/PAS-staining was performed to assess demyelination, and the demyelinated area of spinal cross-sections (expressed as % of total white matter) was measured manually using Pannoramic Viewer 1.15 software (http://www.3dhistech.com/pannoramic_viewer). Images from both healthy and EAE groups were analyzed by an evaluator blinded to the group status of the images.To assess […]

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Prenatal Metformin Exposure in a Maternal High Fat Diet Mouse Model Alters the Transcriptome and Modifies the Metabolic Responses of the Offspring

2014
PLoS One
PMCID: 4277397
PMID: 25541979
DOI: 10.1371/journal.pone.0115778
call_split See protocol

[…] pared form paraffin-embedded gWAT and stained with hematoxylin and eosin. The slides were scanned with Pannoramic 250 Whole Slide Digital Scanner (PerkinElmer, MA, USA) and 20× images were taken with Pannoramic Viewer (www.3dhistech.com/pannoramic_viewer). The areas of the adipocytes were quantified by a semi-automated method described in Parlee et al. with minor modifications. RGB-images were sp […]

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