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PANNOTATOR specifications

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Unique identifier OMICS_08618
Name PANNOTATOR
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline V. Azevedo <>

Publication for PANNOTATOR

PANNOTATOR in publications

 (4)
PMCID: 5282893
PMID: 28163825
DOI: 10.1186/s40793-017-0234-6

[…] strain mb11 was very satisfactory; the positions of the restriction sites were corroborated by the optical map analysis.fig. 3 , an automatic annotation was first conducted using the online software pannotator [], which provided the .fasta files for the assembled genomes and a reference .embl file for c. pseudotuberculosis 316. the results were then manually curated to meet the gene annotation […]

PMCID: 5268413
PMID: 28125655
DOI: 10.1371/journal.pone.0170676

[…] software mauve using c. pseudotuberculosis mb11 as the reference genome because its assembly was confirmed by the in vitro optical map. the high-quality scaffolds were submitted to the web software pannotator [] for automatic annotation using the c. pseudotuberculosis 316 as the reference genome. subsequently, the predicted cdss were manually cured with artemis v.14.0.0 software [] to meet […]

PMCID: 5034146
PMID: 27660795
DOI: 10.1128/genomeA.01025-16

[…] assembly resulted in two chromosomal contigs (contig_1, 79,307 bp; contig_2, 2,014,050 bp), as well as one plasmid contig (contig_3, 14,059 bp)., we employed an annotation transfer strategy using pannotator () and as reference the annotation of the s. macedonicus aca-dc 198 genome. pannotator annotations were further enriched with rast (). the annotation transfer resulted in a total of 2,246 […]

PMCID: 4411478
PMID: 25721608
DOI: 10.1016/j.gpb.2015.01.007

[…] gene identification, pangenome profiling, graphical display, and phylogenetic tree construction into one powerful toolkit. several other tools were also available in 2013, such as pancake and pannotator . pancake was developed for identifying singletons and core regions in arbitrary sequence sets, while pannotator, a web-based automated pipeline, was designed for the annotation […]

PANNOTATOR institution(s)
Laboratório de Genética Celular e Molecular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil

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