PANNZER protocols

PANNZER specifications

Information


Unique identifier OMICS_07449
Name PANNZER
Alternative name Protein ANNotation with Z-score
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Database management system MySQL
Computer skills Advanced
Stability Stable
Requirements Python, MySQL database, NCBI blastall
Maintained Yes

Versioning


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Maintainer


  • person_outline Patrik Koskinen <>

Publications for Protein ANNotation with Z-score

PANNZER IN pipeline

2016
PMCID: 4956264
PMID: 27441920
DOI: 10.1371/journal.pone.0159302

[…] with a combination of sequence similarity based methods: best blastp [45] match to s. cerevisiae proteins, best blastp match to uniprotkb/swiss-prot [46], interproscan domain predictions [26], pannzer description line and go-category predictions [47] and a manually curated set of aspergillus niger protein secretion related genes [48]., the t. reesei secretion network contains in total 320 […]

PANNZER institution(s)
Department of Biosciences, University of Helsinki, Helsinki, Finland and Institute of Biotechnology, University of Helsinki, Helsinki, Finland

PANNZER review

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Anonymous user #1426

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Desktop
Excellent tool!