PanOCT pipeline

PanOCT specifications


Unique identifier OMICS_09492
Name PanOCT
Alternative name Pan-genome Ortholog Clustering Tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Derrick E. Fouts <>

Publication for Pan-genome Ortholog Clustering Tool

PanOCT citation

PMCID: 4758666

[…] acids lauric acid, stearic acid, and decanoate and aminoethanol, meso-2,6, diaminopimelate, as well a variety of amino acids (glutamate, aspartate, tyrosine, phenylalanine, asparagine (s3 table)., panoct data were used to identify the cob i/iii and cob ii gene clusters in infectious and non-infectious leptospira (when present), which encode proteins predicted to participate in b12 transport […]

PanOCT institution(s)
J Craig Venter Institute, Chinakville, MD, USA
PanOCT funding source(s)
This project was funded in whole or part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services under contract numbers N01-AI30071 and / or HHSN272200900007C.

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