PANTHER protocols

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description
PANTHER computational protocol

PANTHER specifications

Information


Unique identifier OMICS_00135
Name PANTHER
Alternative name Protein ANalysis THrough Evolutionary Relationships
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 10.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Paul D. Thomas <>

Additional information


A R package containing data is available at http://bioconductor.org/packages/PANTHER.db/

Publications for Protein ANalysis THrough Evolutionary Relationships

PANTHER IN pipelines

 (2)
2017
PMCID: 5704591
PMID: 29179763
DOI: 10.1186/s12915-017-0450-y

[…] v12 platform and our expression profiles., we obtained standard gene information of v. carteri f. nagariensis from the phytozome v12 platform [53], including pfam [102–104], go [108, 109], and panther annotation data [105–107]. the v. carteri gene information of phytozome v12 came originally from the us department of energy's joint genome institute annotation v2.1 of v. carteri genome […]

2016
PMCID: 4882050
PMID: 27228164
DOI: 10.1371/journal.pone.0156018

[…] statistica 12 for correlation analysis, and david bioinformatics resources 6.7 for functional classification [41, 42]. the proteins identified were also mapped with gene ontology terms using the panther db [43,44], and the overrepresentation test was performed using a p-value < 0.05. those proteins that could not be annotated using panther were annotated with argot2 (total score > 200) […]

PANTHER institution(s)
Division of Bioinformatics, Department of Preventive Medicine, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA
PANTHER funding source(s)
NHGRI (NIH) [U41HG002273]; NIGMS (NIH) [U24GM088849]

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