PanVC specifications
Information
| Unique identifier | OMICS_29603 |
|---|---|
| Name | PanVC |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Shell (Bash) |
| Computer skills | Advanced |
| Stability | Stable |
| Source code URL | https://gitlab.com/dvalenzu/PanVC |
| Maintained | Yes |
Download
Versioning
No version available
Maintainer
- person_outline Veli Makinen
Publication for PanVC
2018 BMC Genomics
PMCID: 5954285
PMID: 29764365
DOI: 10.1186/s12864-018-4465-8
PanVC citation
library_books
seq seq pan: building a computational pan genome data structure on whole genome alignment
2018
BMC Genomics
PMCID: 5769345
PMID: 29334898
DOI: 10.1186/s12864-017-4401-3
[…] l tools. While four of the analyzed tools - JST [], MHC-PRG [], PanCake [], and vg [] - provide methods for adding or removing genomes from the pan-genome data structure, only GenomeRing [], JST [], panVC [] and vg [] offer the ability to annotate biological features. This is often caused by the representation of the pan-genome as graphs, for which there is no standard method providing a coordina […]
PanVC institution(s)
Department of Computer Science, Helsinki Institute for Information Technology HIIT, University of Helsinki, Helsinki, Finland; Department of Medical and Clinical Genetics, Genome-Scale Biology Program, University of Helsinki, Helsinki, Finland; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany
PanVC funding source(s)
Supported by the Academy of Finland (grants 284598 and 287665).
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