Permits visualization of pangenome analysis. PanViz allows visualization of changes in gene group classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. It allows for rich and complex visual querying of gene groups in the pangenome. PanViz helps researchers in understanding how different pangenomes differ on a functional level rather than simply in terms of shared gene groups.

User report

0 user reviews

0 user reviews

No review has been posted.

PanViz forum

No open topic.

PanViz classification

PanViz specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
Javascript
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
0.3.1

Publications

Credits

Institution(s)

Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark; Assays, Culture and Enzymes Division, Hørsholm, Denmark; Comparative Genomics Group, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA; Department Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, USA

Funding source(s)

This work was supported by The Danish Agency for Science, Technology and Innovation.

Link to literature

Related Pan-genome analysis tools

Most Recent Tools

Web app
Phandango Phandango

Phandango

Allows visualisation of a phylogenetic tree, associated metadata and genomic…

Allows visualisation of a phylogenetic tree, associated metadata and genomic information such as recombination blocks, pan-genome contents or GWAS results. Phandango is an interactive web app…

panX panX

panX

Breaks the annotated genomes of a large number of strain into genes and further…

Breaks the annotated genomes of a large number of strain into genes and further clusters annotated genes into orthologous groups. panX is a web-based environment for microbial pan-genome data…

Desktop app
G T A T C G C T A De-Novo Genome… De-Novo Genome Analysis Pipeline

DeNoGAP De-Novo Genome Analysis Pipeline

Performs reference-assisted and de novo gene prediction, homolog protein family…

Performs reference-assisted and de novo gene prediction, homolog protein family assignment, ortholog prediction, functional annotation, and pan-genome analysis. DeNoGAP integrates bioinformatics…

Rice PAN-genome… Rice PAN-genome Browser

RPAN Rice PAN-genome Browser

A comprehensive dataset of rice sequences. RPAN presents analysis results from…

A comprehensive dataset of rice sequences. RPAN presents analysis results from 3K rice genome data which provides new perspective for rice researchers and breeding experts. RPAN includes the…

Most Popular Tools

Integrated Toolkit… Integrated Toolkit for Exploration of microbial…

ITEP Integrated Toolkit for Exploration of microbial Pan-genomes

A suite of scripts and Python libraries for the comparison of microbial…

A suite of scripts and Python libraries for the comparison of microbial genomes. ITEP includes tools for de novo protein family prediction by clustering, ortholog detection, analysis of functional…

16 related tools

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.