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Permits visualization of pangenome analysis. PanViz allows visualization of changes in gene group classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. It allows for rich and complex visual querying of gene groups in the pangenome. PanViz helps researchers in understanding how different pangenomes differ on a functional level rather than simply in terms of shared gene groups.

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PanViz forum

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PanViz versioning

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PanViz classification

PanViz specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
Javascript
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
0.3.1
Issue URL:
https://github.com/thomasp85/PanViz/issues

PanViz support

Documentation

Maintainer

Credits

Publications

Institution(s)

Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark; Assays, Culture and Enzymes Division, Hørsholm, Denmark; Comparative Genomics Group, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA; Department Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, USA

Funding source(s)

This work was supported by The Danish Agency for Science, Technology and Innovation.

Link to literature

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