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Protocols

PanViz specifications

Information


Unique identifier OMICS_14672
Name PanViz
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Javascript
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.3.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Thomas Lin Pedersen

Publication for PanViz

PanViz citations

 (4)
library_books

Metaviz: interactive statistical and visual analysis of metagenomic data

2018
Nucleic Acids Res
PMCID: 5887897
PMID: 29529268
DOI: 10.1093/nar/gky136

[…] athoStat.html]. Pavian is an R package that incorporates Shiny and D3.js () components to enable interactive analysis of results for metagenomic classification tools [https://doi.org/10.1101/084715]. Panviz is a tool for exploring annotated pan genome datasets based on D3.js libraries (). Krona is a web-based tool for metagenomics visualization that provides a sunburst diagram to navigate the feat […]

call_split

PanViz: interactive visualization of the structure of functionally annotated pangenomes

2016
Bioinformatics
PMCID: 5859990
PMID: 28057677
DOI: 10.1093/bioinformatics/btw761
call_split See protocol

[…] PanViz is written entirely in JavaScript using D3 (). It is completely self-contained, embedded in a single HTML file, and does not require any connection to external sources. A companion R package, P […]

library_books

The Challenge of Big Data in Public Health: An Opportunity for Visual Analytics

2014
PMCID: 3959916
PMID: 24678376
DOI: 10.5210/ojphi.v5i3.4933

[…] uch as Tableau can be utilized to ensure health resources are managed and dispensed properly. VA tools create an environment that incorporates predictive models to support PH stakeholders’ reasoning. Panviz [] is an interactive predictive decision support environment that allows stakeholders to explore epidemic models and understand the effect certain response measures could have on the spread of […]

library_books

Beyond information access: Support for complex cognitive activities in public health informatics tools

2012
PMCID: 3615827
PMID: 23569645
DOI: 10.5210/ojphi.v4i3.4270

[…] al tools for epidemiological simulation, analysis, and decision support such as STEM [], DDSS [], SOVAT [], EpiScanGIS [], MDAST [], Zeilhofer and colleagues’ component-based tool [], Epinome [], and PanViz [], but exclude simple medical alert notification systems such as those described by Lombardo and colleagues [] or Gesteland and colleagues []. Throughout the paper we refer to this class of to […]


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PanViz institution(s)
Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark; Assays, Culture and Enzymes Division, Hørsholm, Denmark; Comparative Genomics Group, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA; Department Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, USA
PanViz funding source(s)
This work was supported by The Danish Agency for Science, Technology and Innovation.

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