PanWeb specifications

Information


Unique identifier OMICS_18666
Name PanWeb
Interface Web user interface
Restrictions to use None
Input data An annotation files for each genome.
Input format EMBL
Programming languages PHP, R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Rommel T. J. Ramos
  • person_outline Yan Pantoja

Publication for PanWeb

PanWeb citation

library_books

PGAP X: extension on pan genome analysis pipeline

2018
BMC Genomics
PMCID: 5780747
PMID: 29363431
DOI: 10.1186/s12864-017-4337-7

[…] ts, gene cluster table, alignment, comparative phylogenies, metadata table []. However, it does not provide information about genome structure, gene distribution on the genome, and genetic variation. PanWeb serves as a web-based PGAP, and output results from PGAP will be presented as images by R scripts in panWeb []. PGAP did not integrate and interpret genome structure and gene distribution, whic […]

PanWeb institution(s)
Institute of Biological Sciences, Federal University Para, Belem, Brazil
PanWeb funding source(s)
Supported by the State of Para Research Foundation (Fundacão de Amparo a Pesquisa do Estado do Para) and by the Brazilian National Council for Scientific and Technological Development (Conselho Nacional de Desenvolvimento Cientifico e Tecnologico - CNPq).

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