PAPRICA specifications

Information


Unique identifier OMICS_10562
Name PAPRICA
Alternative name PAthway PRediction by phylogenetIC plAcement
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data 16S rRNA gene reads
Output data Predicted metabolic pathways, taxonomic assignment, additional estimated parameters for genome
Operating system Unix/Linux, Mac OS
Programming languages Python, Shell (Bash)
Computer skills Advanced
Version 0.20
Stability Beta
Requirements Pandas, infernal, pplacer, seqmagick
Maintained Yes

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Documentation


Maintainer


  • person_outline Jeff S. Bowman <>

Publication for PAthway PRediction by phylogenetIC plAcement

PAPRICA institution(s)
Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, USA

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