ParaDockS statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Protein-ligand docking chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ParaDockS specifications

Information


Unique identifier OMICS_23899
Name ParaDockS
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.1.1
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Publication for ParaDockS

ParaDockS in publications

 (4)
PMCID: 3341317
DOI: 10.1186/1758-2946-4-S1-F3

[…] ligand complexes, is still a challenging task. many different algorithms and approaches try to solve the molecular docking problem. within this work we introduce the open source docking platform paradocks (parallel docking suite) [], that allows the convenient incorporation of existing and new approaches either to describe ligand-receptor interaction or to search for native poses., the goal […]

PMCID: 3341274
DOI: 10.1186/1758-2946-4-S1-P35

[…] with molecular docking algorithms to make them simply applicable for virtual screening. therefore, the aim of this work is the implementation of general tools within the open-source framework paradocks [] to obtain target-class-specific scoring functions. these scoring functions are based on knowledge-based atom-pair potentials which can be used in an additive manner (pmf-score) to score […]

PMCID: 3332061
PMID: 22532837
DOI: 10.1371/journal.pone.0034973

[…] compounds of the biomol kinase inhibitor library, which were tested in the in-vitro assay, were docked into the atp binding pocket of prk1. we used three different docking methods (gold , glide and paradocks ) and five different scoring functions (chemscore, goldscore, glidescore, paradocks p-score and amber gbsa score , ). in total, 63 compounds could be successfully docked into the atp […]

PMCID: 2746281
PMID: 19789626
DOI: 10.1371/journal.pone.0007258

[…] of dmso., x-ray coordinates of the sti571/abl (1iep.pdb) and sti571/kit (1t46.pdb) x-ray structures were taken from the protein databank and used in combination with our in-house docking program, paradocks, and the x-score of wang et al. to dock masitinib into abl and kit. figures were prepared with pymol version 1.00 (delano scientific)., female mbri nu/nu mice (7 weeks old) (janvier, […]


To access a full list of publications, you will need to upgrade to our premium service.

ParaDockS institution(s)
Department of Pharmaceutical Chemistry, Martin-Luther Universitat Halle-Wittenberg, Halle/Saale, Germany; Research Center Pharmaceutical Engineering GmbH, Graz, Austria; Biotechnologisches Zentrum der TU Dresden, Dresden, Germany; CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany

ParaDockS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ParaDockS