Parallel-META pipeline

Parallel-META specifications

Information


Unique identifier OMICS_01519
Name Parallel-META
Alternative name Parallel-META 3
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C, C++, R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Kang Ning <>
  • person_outline Xiaoquan Su <>

Publications for Parallel-META

Parallel-META citation

2014
PMCID: 4165942

[…] illustrated in figure 9:, the community structure profiles of all samples are parsed out from their 16s rrna gene sequences by high efficient metagenomic analysis tool parallel-meta36 (version 2.0). parallel-meta maps the 16s rrna sequences of each sample by megablast37 to the reference database to identify the taxonomical classification and phylogenetic relationship of each species. […]

Parallel-META institution(s)
Single-Cell Center, Shandong Key Laboratory of Energy Genetics and CAS Key Laboratory of Biofuels, Qingdao, China; Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China
Parallel-META funding source(s)
Supported by grants from National Natural Science Foundation of China [61303161], Ministry of Science and Technology [2014AA21502], Open Fund of Key Laboratory of Marine Ecology and Environmental Science, Institute of Oceanology, Chinese Academy of Sciences [KLMEES201304], and Soil Microbiome Program, Chinese Academy of Sciences [XDB15040100].

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