Parallel-META statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Whole genome alignment Microbial taxonomy identification Multiple nucleotide sequence alignment Homology-based taxonomic classification Bioinformatics workflows chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Parallel-META specifications

Information


Unique identifier OMICS_01519
Name Parallel-META
Alternative name Parallel-META 3
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C, C++, R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainers


  • person_outline Kang Ning <>
  • person_outline Xiaoquan Su <>

Publications for Parallel-META

Parallel-META in pipeline

2016
PMCID: 5120256
PMID: 27876778
DOI: 10.1038/srep37376

[…] also removed. this set of high-quality reads was then used for further analysis. the sample taxonomic profile was also determined directly from the metagenome dataset using two online software, i.e. parallel-meta and metaphlan, following the instructions of the two software developers., the microbial illumina reads were assembled into contigs using idba-ud with default parameters. genes […]


To access a full list of citations, you will need to upgrade to our premium service.

Parallel-META in publications

 (4)
PMCID: 5541433
PMID: 28768551
DOI: 10.1186/s40168-017-0315-1

[…] runs in excess of 8 bases, were removed using parallel-qc [] and qiime []. then the sequences were checked for chimeras using uchime [] and assigned to operational taxonomic units (otus) using parallel-meta [, ] with a 97% threshold of pairwise identity, and then classified taxonomically using the green genes reference database []. to standardize sequence counts across samples with uneven […]

PMCID: 5120256
PMID: 27876778
DOI: 10.1038/srep37376

[…] using a more traditional approach based on 16s rrna amplicon sequencing, we also extracted the taxonomic profiles directly from the metagenome dataset by using two publicly accessible online tools, parallel-meta and metaphlan (). we found some discrepancies between the phylogenic metagenome profiles as determined by the three methods; such discrepancies are possibly caused by the differences […]

PMCID: 4223665
PMID: 25376098
DOI: 10.1038/srep06957

[…] dataset e, rate of targeting reads was raised up to 96.3% on average by qc-chain in the post-qc data (). we further evaluated the effect of the qc process by downstream comparison analysis. we used parallel-meta to generate the microbial community structures, and then calculated the similarity of structures based on meta-storms with mixed data and post-qc data to the targeting data, […]

PMCID: 4165942
PMID: 25227622
DOI: 10.1038/srep06393

[…] the mdv model. the overall scheme is illustrated in :, the community structure profiles of all samples are parsed out from their 16s rrna gene sequences by high efficient metagenomic analysis tool parallel-meta (version 2.0). parallel-meta maps the 16s rrna sequences of each sample by megablast to the reference database to identify the taxonomical classification and phylogenetic relationship […]


To access a full list of publications, you will need to upgrade to our premium service.

Parallel-META institution(s)
Single-Cell Center, Shandong Key Laboratory of Energy Genetics and CAS Key Laboratory of Biofuels, Qingdao, China; Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong, China
Parallel-META funding source(s)
Supported by grants from National Natural Science Foundation of China [61303161], Ministry of Science and Technology [2014AA21502], Open Fund of Key Laboratory of Marine Ecology and Environmental Science, Institute of Oceanology, Chinese Academy of Sciences [KLMEES201304], and Soil Microbiome Program, Chinese Academy of Sciences [XDB15040100].

Parallel-META reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Parallel-META