PaSWAS specifications

Unique identifier:
OMICS_08788
Alternative name:
pyPaSWAS
Interface:
Command line interface
Input format:
FASTA,FASTQ
Operating system:
Unix/Linux, Mac OS
Parallelization:
CUDA, OpenCL
Computer skills:
Advanced
Stability:
Stable
Name:
Parallel Smith-Waterman Alignment Software
Software type:
Package/Module
Restrictions to use:
None
Output format:
SAM
Programming languages:
C, Python
License:
MIT License
Version:
3.1.1
Maintained:
Yes

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PaSWAS distribution

download

PaSWAS support

Documentation

Maintainers

  • Jan Peter Nap <>
  • Sven Warris <>

Additional information

https://github.com/swarris/paswas

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Publications

Institution(s)

Expertise Centre ALIFE, Institute for Life Science & Technology, Hanze University of Applied Sciences Groningen, Groningen, The Netherlands; Applied Bioinformatics, Wageningen University and Research, Wageningen, The Netherlands; Parallel and Distributed Systems, Delft University of Technology, Delft, The Netherlands

Funding source(s)

Supported by the SIA RaakPRO grant BioCOMP, a Hanze University of Applied Sciences Groningen PhD grant and contributions from Wageningen University and Research, University Medical Center Groningen and the former Netherlands Bioinformatics Centre.

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