Unlock your biological data

?

Try: RNA sequencing CRISPR Genomic databases DESeq

1 - 9 of 9 results
filter_list Filters
language Programming Language
settings_input_component Operating System
tv Interface
computer Computer Skill
copyright License
1 - 9 of 9 results
piPipes
A coordinated set of pipelines, 'piPipes', to analyze piRNA and transposon-derived RNAs from a variety of high-throughput sequencing libraries, including small RNA, RNA, degradome or 7-methyl guanosine cap analysis of gene expression (CAGE), chromatin immunoprecipitation (ChIP) and genomic DNA-seq. piPipes can also produce figures and tables suitable for publication. By facilitating data analysis, piPipes provides an opportunity to standardize computational methods in the piRNA field.
miRNA Digger
A pipeline for large-scale identification of miRNA candidates through genome-wide screening of cleavage signals based on degradome sequencing data. To test its sensitivity and reliability, miRNA Digger was applied to discover miRNAs from four organs of Arabidopsis. The results revealed that a majority of already known mature miRNAs along with their miRNA*s expressed in these four organs were successfully recovered. Notably, a total of 30 novel miRNA-miRNA* pairs that have not been registered in miRBase were discovered by miRNA Digger. After target prediction and degradome sequencing data-based validation, eleven miRNA–target interactions involving six of the novel miRNAs were identified. Taken together, miRNA Digger could be applied for sensitive detection of novel miRNAs.
0 - 0 of 0 results
0 - 0 of 0 results

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.