PARRoT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PARRoT

Tool usage distribution map

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Associated diseases


Popular tool citations

chevron_left Gene Ontology annotation Differential expression Gene expression clustering De novo transcriptome assembly Bioinformatics workflows Novel transcript quantification chevron_right
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PARRoT specifications


Unique identifier OMICS_24426
Alternative name Pipeline for Analyzing RNA Reads of Transcriptomes
Interface Web user interface
Restrictions to use None
Output format TSV
Programming languages Perl, PHP
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Hsien-Da Huang
  • person_outline Petrus Tang

Additional information

Publication for Pipeline for Analyzing RNA Reads of Transcriptomes

PARRoT citation


Replication Capacity of Avian Influenza A(H9N2) Virus in Pet Birds and Mammals, Bangladesh

PMCID: 4672412
PMID: 26583371
DOI: 10.3201/eid2112.151152

[…] We obtained H9N2 virus isolate A/environment/Bangladesh/9306/2010 (Env/9306) from a fecal sample collected from a parrot cage. Phylogenic data are available for other H9N2 viruses isolated in Bangladesh (), but little phenotypic data exists for this lineage, which represents most H9N2 strains isolated in Banglade […]

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PARRoT institution(s)
Department of Biological Science and Technology, National Chiao Tung University, Taiwan; Bioinformatics Center, Molecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan; Institute of Biomedical Informatics, National Yang-Ming University, Taipei City, Taiwan; Molecular Infectious Diseases Research Center, Chang Gung Memorial Hospital, Taoyuan, Taiwan; Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Taiwan; Molecular Regulation & Bioinformatics Laboratory, Chang Gung University, Taoyuan, Taiwan.
PARRoT funding source(s)
Supported by grant CMRPD190142 from Chang Gung Memorial Hospital and grant MOHW105-TDU-B-212-134002 from Ministry of Health and Welfare (Taiwan).

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