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ParsEval specifications

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Unique identifier OMICS_14476
Name ParsEval
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A genomic sequence
Input format GFF3
Operating system Unix/Linux, Mac OS
Programming languages C
License ISC License
Computer skills Advanced
Stability Stable
Maintained No

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Publication for ParsEval

ParsEval in publications

 (111)
PMCID: 5891646
PMID: 29666568
DOI: 10.3389/fnins.2018.00194

[…] in order to highlight the performance difference between context/grammar-based solution delivered by the kaarma algorithm and results derived from a conventional markov model, neither the log parseval energy of each frame nor the time derivatives, i.e., delta and delta-delta coefficients (furui, ), were used as a feature. hmm will benefit from these dynamic spectral features (skowronski […]

PMCID: 5843288
PMID: 29518126
DOI: 10.1371/journal.pone.0193974

[…] is, h˜i,f(n)=h˜i,fe-i2πf-1mτn,i,(6) and the frobenius norm that has to be minimized is, o=12∑n,m(vn,m-∑i=1kwn,ihi,m-τn,i)2=12m∥vf˜-w˜(f)hf˜∥f2,(7) where the last equality holds because of the parseval’s identity. details of the algorithm of minimization can be found in ref. []., it is important to note that the nmf algorithm with delays determines only the relative delays (the time shifts […]

PMCID: 5853013
PMID: 29568281
DOI: 10.3389/fneur.2018.00121

[…] the total power (the integral of the power spectrum) from the power spectrum density (psd) of angular velocity as suggested by kim et al. (). in fact, one of the results of fourier analysis is the parseval’s theorem, which states that the area under the energy spectral density curve is equal to the area under the square of the magnitude of the signal, i.e., the total energy. a similar result […]

PMCID: 5840464
PMID: 29551968
DOI: 10.3389/fncom.2018.00009

[…] part ĉ(τ) = c(τ)−νδ(τ) to define the correlation time as an integral over the squared and normalized ĉ(τ), an integral which in turn can be related to an integral over the power spectrum via the parseval theorem on the right side., different network compositions are studied, many of which are based on the work of brunel (), specifically on his model b, a heterogeneous random network […]

PMCID: 5826199
PMID: 29515547
DOI: 10.3389/fmicb.2018.00265

[…] for more details refer to vargiu et al. ()., in the course of human evolution most hervs have accumulated mutations, which rendered a large fraction of their retroviral sequences non-functional (de parseval and heidmann, ). there are only two full-length proviruses known from the most recently integrated herv-k family (herv-k113, herv-k115), which show complete reading frames for all viral […]


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ParsEval institution(s)
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA; Department of Biology, Indiana University, Bloomington, IN, USA; School of Informatics and Computing, Indiana University, Bloomington, IN, USA
ParsEval funding source(s)
This work was supported in part by the U.S.A. National Science Foundation Plant Genome Research Program grant ISO#1126267.

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