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Parsimonator specifications

Information


Unique identifier OMICS_30317
Name Parsimonator
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Version 1.0.2
Stability Stable
Maintained No

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Parsimonator citations

 (3)
library_books

Characterization of Genetic Variability of Venezuelan Equine Encephalitis Viruses

2016
PLoS One
PMCID: 4824352
PMID: 27054586
DOI: 10.1371/journal.pone.0152604

[…] We used the genotype data from genomic sequences to create maximum parsimony phylogenetic trees, using Parsimonator (https://github.com/stamatak/Parsimonator-1.0.2). We generated 100 trees using different random number seeds, and selected the most parsimonious (that is, the tree requiring the smallest […]

library_books

ncRNA orthologies in the vertebrate lineage

2016
PMCID: 4792531
PMID: 26980512
DOI: 10.1093/database/bav127

[…] aforementioned strategy in a reasonable amount of time. For these families we build fast trees using FastTree2 () with options -nt -quiet -nopr and RaxML-Light (version 1.0.6) () in combination with Parsimonator v.1.0.2 (http://sco.h-its.org/exelixis/software.html), a lightweight and fast implementation for building starting trees for RAxML under parsimony (with options -p 12345). When built base […]

library_books

Evolution and selection of Rhg1, a copy number variant nematode resistance locus

2015
Mol Ecol
PMCID: 4413360
PMID: 25735447
DOI: 10.1111/mec.13138

[…] od with 10 000 bootstrap replicates to assess reliability of clustering, using mega 6.0 (Tamura et al. ). Clustering of germplasm accessions from the much larger Infinium data set was performed using parsimonator version 1.0.2 (https://github.com/stamatak/Parsimonator-1.0.2). Ten SNPs for each taxon located between 1 620 585 and 1 712 832 bp on chromosome 18 were used for the phylogenetic analysis […]

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