Partek Flow protocols

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description
Partek Flow computational protocol

Partek Flow specifications

Information


Unique identifier OMICS_15740
Name Partek Flow
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

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Partek Flow IN pipelines

 (2)
2017
PMCID: 5516996
PMID: 28723918
DOI: 10.1371/journal.pone.0180873

[…] contrast of interest was performed based on the gene ontology (go) and kegg (kyoto encyclopedia of genes and genomes) annotation using partek pathway. we also transferred the normalized data from partek flow into partek genomics suite to perform pathway anova using the kegg annotation database. this procedure tests for shifts in the expression of all of the transcripts represented […]

2016
PMCID: 5121338
PMID: 27869122
DOI: 10.1038/ncomms13362

[…] v2 (life technologies) and sequenced on the ion proton sequencer platform. raw sequence data were aligned to the latest draft of the human genome using the tophat2 and bowtie2 algorithms within the partek flow suite. using partek's gene specific analysis feature, we calculated enrichment or depletion of polyribosome-associated mrna in each fraction relative to total cellular mrna. […]

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