Partek Flow pipeline

Partek Flow specifications

Information


Unique identifier OMICS_15740
Name Partek Flow
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

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Partek Flow citations

 (2)
2017
PMCID: 5516996

[…] the data summarization, quantification, and normalization of rna counts into total reads per kilobase of gene model per million reads (rpkm) and initial single statistical analysis were performed in partek flow. raw fastq files and normalized rpkm data are freely available in the ncbi gene expression omnibus (accession gse100217). to identify single genes and transcripts with changes […]

2017
PMCID: 5632758

[…] instructions. reactions were loaded onto ion pi chips v3 (thermofisher) for sequencing on an ion proton sequencer according to the manufacturer’s protocol., alignment of reads was performed using partek flow and a two-step alignment procedure. unaligned reads were first aligned (hg19) using the star algorithm (45). following the first alignment, any unaligned reads were then realigned […]

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