Partek Genomics Suite specifications

Information


Unique identifier OMICS_01133
Name Partek Genomics Suite
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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Partek Genomics Suite citations

 (3)
2015
PMCID: 4573460

[…] sequencing core with three multiplexed samples per lane. read alignment was conducted using tophat 2.0.13, and relative transcript abundances and differentially expressed genes were determined using partek genomics suite (v6.6) with default settings. all biological duplicates show high correlation around 0.99 (spearman). hierarchical clustering was performed using genes with a false discovery […]

2014
PMCID: 4234874

[…] were demultiplexed using casava (illumina, san diego, ca). fastq files were used to map reads to the human genome (hg19, ucsc) utilizing tophat2 with default settings. bam files were imported into partek genomics suite (st. louis, mo) for analysis. samples were filtered for ≥ 10 reads. differential gene expression was performed by comparison of biological duplicate samples in genomics suite […]

2012
PMCID: 3443417

[…] all reads were aligned to the chr. 19 sequences from the soybean reference genome [23]. snps between the reference sequence (williams82) and samples were identified using partek genomics suite version 6.5 (partek, st louis, mo). false-positive snps which located outside the amplicons and/or had less than 20 x coverage were removed. the alignment data from the r […]

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