Partek Pathway protocols

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Partek Pathway specifications

Information


Unique identifier OMICS_15741
Name Partek Pathway
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

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Partek Pathway in pipeline

2017
PMCID: 5516996
PMID: 28723918
DOI: 10.1371/journal.pone.0180873

[…] analysis of the 50 most-robustly affected genes for each contrast of interest was performed based on the gene ontology (go) and kegg (kyoto encyclopedia of genes and genomes) annotation using partek pathway. we also transferred the normalized data from partek flow into partek genomics suite to perform pathway anova using the kegg annotation database. this procedure tests for shifts […]


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Partek Pathway in publications

 (9)
PMCID: 5915570
PMID: 29691444
DOI: 10.1038/s41598-018-24811-3

[…] the university of aberdeen proteomics facility following protocols described previously., to gain further insight into the effects of bilirubin on gbs, we performed pathway enrichment analysis using partek pathway in partek genomic suite version 6 using the kegg database and s. agalactiae gene annotation., seven gbs isolates were obtained from the medical microbiology laboratory at aberdeen […]

PMCID: 5789890
PMID: 29382913
DOI: 10.1038/s41598-018-20287-3

[…] analysed for significant epigenetically modified cpg sites in partek genome suite (version 6.6). all gene ontology and kegg signalling pathway– analysis was performed in partek genomic suite and partek pathway, on generated cpg lists of statistical significance (p < 0.05) across conditions (anova) or pairwise comparisons between conditions. in minitab statistical software (minitab version […]

PMCID: 5742900
PMID: 29379227
DOI: 10.1155/2017/3868545

[…] discovery rate (fdr) adjusted p value <0.05 was used in combination with a fold change (fc) ≥ 2. biofunctional analysis was performed using consensuspathdb (http://cpdb.molgen.mpg.de) [] and partek pathway software (partek, st louis, mo, usa)., data were initially tested for normal distribution. generalized linear models (for longitudinal data with normal distributed variables) […]

PMCID: 5870448
PMID: 28947667
DOI: 10.1136/thoraxjnl-2017-210413

[…] response through cell death mechanisms. to gain additional insight into the potential signalling pathways affected by the altered genes, we performed a gene set enrichment analysis using partek pathway. among the top 10 pathways that were significantly enriched in genes altered by high plasma angpt2 levels after lps injury (), several were linked to vascular inflammation […]

PMCID: 5559076
PMID: 28813466
DOI: 10.1371/journal.pone.0183042

[…] rma function [] of the accc software [affymetrix gene expression console (affymetrix, santa clara, ca)]. statistical and pathway analysis of data were conducted using partek genomics suite 6.6 and partek pathway (partek incorporated, st louis, mo) and tac software (affymetrix transcriptome analysis console 3.0, affymetrix, inc). an anova was executed to generate a list of genes displaying […]


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