Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

Partial least squares Analyses for Genomics Plsgenomics

Online

A statistical approach based on partial least squares regression to infer the true TFAs from a combination of mRNA expression and DNA-protein binding measurements. Plsgenomics is also statistically sound for small samples and allows the detection of functional interactions among the transcription factors via the notion of "meta"-transcription factors. Plsgenomics performs very well both for simulated data and for real expression and ChIP data from yeast and E. Coli experiments. It overcomes the limitations of previously used approaches to estimating TFAs.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

Plsgenomics forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Plsgenomics classification

Plsgenomics specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://cran.r-project.org/src/contrib/plsgenomics_1.3-1.tar.gz
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0, GNU General Public License version 2.0
Version:
1.3-1
Requirements:
MASS, boot, parallel
Maintained:
Yes

Plsgenomics distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

Plsgenomics support

Documentation

Maintainer

  • Ghislain Durif <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Funding source(s)

This work was supported by the Deutsche Forschungsgemeinschaft (DFG) through an Emmy-Noether research grant to K.S. and the Sonderforschungsbereich 386.

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.