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Particle tracking | Bioimaging software tools

Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated…
u-track
Desktop

u-track

A multiple-particle tracking Matlab software that is designed to (1) track…

A multiple-particle tracking Matlab software that is designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle…

ClusterTrack
Desktop

ClusterTrack

A Matlab software developed for the purpose of proving the principle that full…

A Matlab software developed for the purpose of proving the principle that full microtubule dynamics can be tracked and inferred based on +TIP marker live cell image sequences only. Note, this package…

Icy
Desktop

Icy

A collaborative bioimage informatics platform that combines a community website…

A collaborative bioimage informatics platform that combines a community website for contributing and sharing tools and material, and software with a high-end visual programming framework for seamless…

TraJClassifier
Desktop

TraJClassifier

Supports local analysis and is able to split a single trajectory into segments…

Supports local analysis and is able to split a single trajectory into segments with different motion types. TraJClassifier is a Fiji plugin providing a practical and device-independent method to…

KiT
Desktop

KiT Kinetochore Tracking

An easy-to-use, open-source software package for tracking kinetochores from…

An easy-to-use, open-source software package for tracking kinetochores from live-cell fluorescent movies. KiT supports 2D, 3D and multi-colour movies, quantification of fluorescence, integrated…

gmm-marker-trac…
Desktop

gmm-marker-tracking

Improves fiducial marker tracking. gmm-marker-tracking is based on a Gaussian…

Improves fiducial marker tracking. gmm-marker-tracking is based on a Gaussian mixture model. It permits automatic tracking for datasets with a massive number of fiducial markers. This tool can…

adaptiveSPT
Desktop

adaptiveSPT

The performance of the single particle tracking (SPT) nearest-neighbor…

The performance of the single particle tracking (SPT) nearest-neighbor algorithm is determined by parameters that need to be set according to the characteristics of the time series under study.…

CellProfiler
Desktop

CellProfiler

A free, open-source system designed for flexible, high-throughput cell image…

A free, open-source system designed for flexible, high-throughput cell image analysis. CellProfiler can address a variety of biological questions quantitatively, including standard assays (for…

Aivia
Desktop

Aivia

Combines state-of-the-art automated neuron tracing and machine learning-enabled…

Combines state-of-the-art automated neuron tracing and machine learning-enabled neuron classification tools. Aivia provides methods for analyzing time-lapse images. It covers a wide range of…

plusTipTracker
Desktop

plusTipTracker

A Matlab software package for tracking the full dynamics of microtubules based…

A Matlab software package for tracking the full dynamics of microtubules based on +TIP marker live cell image sequences. Concepts are related to the ClusterTrack software; however, the tracking…

TIKAL
Desktop

TIKAL

A 4-D image processing platform for the work with laser scanning and wide field…

A 4-D image processing platform for the work with laser scanning and wide field microscopes. TIKAL provides a registration software for correcting global movements and local deformations of cells as…

Particle…
Desktop

Particle Tracker

A 2D and 3D feature point-tracking tool for the automated detection and…

A 2D and 3D feature point-tracking tool for the automated detection and tracking of particle trajectories as recorded by video imaging in cell biology. Particle Tracker is part of the MOSAICsuite,…

DiaTrack
Desktop

DiaTrack

Benchmark object tracking software for 2D and 3D applications, such as…

Benchmark object tracking software for 2D and 3D applications, such as biological imaging, rheology, or single molecule imaging. DiaTrack provides a compelling set of tools to extract quantitative…

ImarisTrack
Desktop

ImarisTrack

A live cell imaging, tracking & analysis software that rises to the…

A live cell imaging, tracking & analysis software that rises to the challenge of monitoring temporal changes in biological systems (2D and 3D images over time). ImarisTrack is based on a choice…

SpotTracker
Desktop

SpotTracker

A robust and fast computational procedure for tracking fluorescent markers in…

A robust and fast computational procedure for tracking fluorescent markers in time-lapse microscopy. The algorithm is optimized for finding the time-trajectory of single particles in very noisy image…

Manual Tracking
Desktop

Manual Tracking

This plug-in allows the user to quantify movement of objects between frames of…

This plug-in allows the user to quantify movement of objects between frames of a temporal stack, in 2D and 3D. Manual Tracking provides a way to retrieve in a table XY and XYZ coordinates as well as…

Mtrack2
Desktop

Mtrack2

It is based on the MultiTracker plugin by Jeffrey Kuhn which is based on the…

It is based on the MultiTracker plugin by Jeffrey Kuhn which is based on the Object tracker plugin by Wayne Rasband. In contrast to the Multitracker plugin, the number of objects may vary between…

MTrackJ
Desktop

MTrackJ

An ImageJ plugin to facilitate manual tracking of moving objects in image…

An ImageJ plugin to facilitate manual tracking of moving objects in image sequences and the measurement of basic track statistics. The plugin can handle up to five-dimensional (5D) images of any type…

Octane
Desktop

Octane

Facilitates works involved in super-resolution optical imaging (PALM, STORM…

Facilitates works involved in super-resolution optical imaging (PALM, STORM etc). By providing an intuitive graphical user interface front end, we hope it can serve as a useful tool for a wide range…

Image-Pro
Desktop

Image-Pro

Includes the latest tools for scientific and industrial image analysis and…

Includes the latest tools for scientific and industrial image analysis and image processing. Image-Pro offers 64-bit support, a user-friendly interface, intuitive macros and app building tools, new…

Volocity
Desktop

Volocity

Provides all the tools you need to visualize, analyze and validate 3D…

Provides all the tools you need to visualize, analyze and validate 3D fluorescence images from a wide range of confocal microscopy, widefield and high content screening systems and is fully…

MetaMorph
Desktop

MetaMorph

It is the ideal "glue" for easily integrating dissimilar fluorescent…

It is the ideal "glue" for easily integrating dissimilar fluorescent microscope hardware and peripherals into a single custom workstation, while providing all the tools needed to perform…

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