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ParticleCall | A particle filter for base calling in next-generation sequencing systems

A particle filtering algorithm for base calling in the Illumina’s sequencing-by-synthesis platform. ParticleCall is developed by relying on an HMM representation of the sequencing process. Experimental results demonstrate that the ParticleCall base calling algorithm is more accurate than Bustard, Rolexa, and naiveBayesCall. It is as accurate as BayesCall while being significantly faster. Quality score analysis of the reads indicates that ParticleCall has better discrimination ability than BayesCall, naiveBayesCall and Bustard.

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ParticleCall forum

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ParticleCall classification

ParticleCall specifications

Unique identifier:
OMICS_01154
Interface:
Command line interface
Input format:
INT
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Biological technology:
Illumina
Computer skills:
Advanced
Maintained:
Yes

ParticleCall distribution

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No versioning.

ParticleCall support

Maintainer

  • Haris Vikalo <>

Credits

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Publications

Institution(s)

Department of Electrical and Computer Engineering, University of Texas at Austin, TX, USA

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