PartiGene specifications

Information


Unique identifier OMICS_16924
Name PartiGene
Alternative name PartiGeneDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Subtool


  • wwwPartiGene

Maintainer


  • person_outline John Parkinson

Publications for PartiGene

PartiGene citations

 (2)
library_books

A Transcriptomic Analysis of Echinococcus granulosus Larval Stages: Implications for Parasite Biology and Host Adaptation

2012
PLoS Negl Trop Dis
PMCID: 3510090
PMID: 23209850
DOI: 10.1371/journal.pntd.0001897

[…] se groups containing only a single sequence (‘singletons’) form a non-redundant set of gene sequences, which we refer to as a partial genome. The corresponding E. granulosus dataset is available from PartiGeneDB (http://www.compsysbio.org/partigene/annotation/viewset.php). For comparative purposes, we also performed TBLASTX comparisons against: 1) a set of 688 eukaryotic partial genomes in our in- […]

library_books

Objective sequence based subfamily classifications of mouse homeodomains reflect their in vitro DNA binding preferences

2010
Nucleic Acids Res
PMCID: 3001082
PMID: 20705649
DOI: 10.1093/nar/gkq714

[…] ion structures deposited in the PDB, 175 HD sequences from InterPro () that matched the homeobox signature in Pfam () and 254 HD sequences retrieved from the database of expressed sequence tags (EST) PartiGeneDB () (see Supplementary Methods for details). […]

PartiGene institution(s)
Program in Genetics and Genomic Biology, Toronto, ON, Canada; Program in Structural Biology and Biochemistry, Hospital for Sick Children, Toronto, ON, Canada; Department of Biochemistry and Department of Medical Genetics and Molecular Biology, University of Toronto, Toronto, Ontario, Canada
PartiGene funding source(s)
This work was supported by the Hospital for Sick Children (Toronto, Ontario, Canada) Research Training Centre.

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