partis specifications


Unique identifier OMICS_13532
Name partis
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data B-cell receptor sequences, parameters particular to the input sequence file
Input format FASTA
Output data The germline genes used to make the BCR, the amount of junctional exonuclease deletion for each gene, the size of junctional insertions (N-regions) between the trimmed germline genes, the joint probability of sequence and annotation
Output format CSV
Operating system Unix/Linux
Programming languages C, C++, Perl, Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.13.0
Stability Stable
Requirements ham, ig-sw
Maintained Yes



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  • person_outline Frederick A. Matsen <>
  • person_outline Duncan Ralph <>

Publications for partis

partis institution(s)
Fred Hutch, Seattle, Washington, USA
partis funding source(s)
Supported by NIH grants U19- AI117891, R01-GM113246, and R01-AI12096 and, in part, by a Faculty Scholar grant from the Howard Hughes Medical Institute and the Simons Foundation.

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