partis specifications

Unique identifier:
OMICS_13532
Interface:
Command line interface
Input data:
B-cell receptor sequences, parameters particular to the input sequence file
Output data:
The germline genes used to make the BCR, the amount of junctional exonuclease deletion for each gene, the size of junctional insertions (N-regions) between the trimmed germline genes, the joint probability of sequence and annotation
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
0.13.0
Requirements:
ham, ig-sw
Software type:
Application/Script
Restrictions to use:
None
Input format:
FASTA
Output format:
CSV
Programming languages:
C, C++, Perl, Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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partis distribution

download

partis support

Documentation

Maintainers

  • Frederick A. Matsen <>
  • Duncan Ralph <>

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Publications

Institution(s)

Fred Hutch, Seattle, Washington, USA

Funding source(s)

Supported by NIH grants U19- AI117891, R01-GM113246, and R01-AI12096 and, in part, by a Faculty Scholar grant from the Howard Hughes Medical Institute and the Simons Foundation.

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