PASC pipeline

PASC specifications

Information


Unique identifier OMICS_06326
Name PASC
Alternative name PAirwise Sequence Comparison
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PAirwise Sequence Comparison

PASC IN pipelines

 (8)
2017
PMCID: 5256216
PMID: 28082492
DOI: 10.1128/genomeA.01445-16

[…] for a nonstructural polyprotein (encoding putative helicase, protease, and rna-dependent rna polymerase) and a capsid protein precursor (encoding proteins vp1 to vp4). a blast-based search with the pairwise sequence comparison (pasc) tool (21), revealed that the tm19 genome sequence most resembled chinese isolate lgh (accession no. kr021407) with 93.8% nt identity. as mentioned above, […]

2017
PMCID: 5256216
PMID: 28082492
DOI: 10.1128/genomeA.01445-16

[…] (encoding putative helicase, protease, and rna-dependent rna polymerase) and a capsid protein precursor (encoding proteins vp1 to vp4). a blast-based search with the pairwise sequence comparison (pasc) tool (21), revealed that the tm19 genome sequence most resembled chinese isolate lgh (accession no. kr021407) with 93.8% nt identity. as mentioned above, the purpose of these studies […]

2017
PMCID: 5270694
PMID: 28126935
DOI: 10.1128/genomeA.01485-16

[…] (ncbi) sequence database using blast. reads were aligned back to the assembled bhv sequence using bowtie2 (17), and custom scripts were used to generate a final consensus sequence., using pasc (18), the determined complete bhv genome sequence was found to be 72.79% identical to that of tibv (genbank accession no. gq294472.1) and 72.48% identical to that of bav (kp688373.1). the genome […]

2017
PMCID: 5626979
PMID: 29033917
DOI: 10.3389/fmicb.2017.01870

[…] additionally, genome annotation was verified and curated by blast analysis (altschul et al., 1990). the assembled genome sequence was compared to other characterized bacteriophages using the pasc web tool (bao et al., 2014) and blast analysis (altschul et al., 1990)., bacteriophage stability was tested for bacteriophage bf25/12. a bacteriophage suspension was prepared in smg buffer, […]

2016
PMCID: 4966459
PMID: 27469955
DOI: 10.1128/genomeA.00718-16

[…] a coverage of 330×. the assembled full-length genome from dl76 was 5,845 nucleotides in length with the six open reading frames typical of the genus polerovirus. a blast-based search through the pairwise sequence comparison (pasc) tool (7) revealed an isolate resembling taiwanese isolate tw19. comparison of their genomic sequences found that east timorese isolate dl76 had a pairwise […]

PASC institution(s)
National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD, USA

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