Pasha specifications


Unique identifier OMICS_11514
Name Pasha
Alternative name Preprocessing of Aligned Sequences from HTS Analyses
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.99.21
Stability Stable
Requirements Parallel, GenomicAlignments
Maintained Yes


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  • person_outline Romain Fenouil <>

Publication for Preprocessing of Aligned Sequences from HTS Analyses

Pasha institution(s)
Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, New York, USA; Howard Hughes Medical Institute, New York University Langone School of Medicine, Department of Biochemistry and Molecular Pharmacology, NY, New York, USA; Centre d’Immunologie de Marseille-Luminy, Aix Marseille Université UM2, Inserm U1104, CNRS UMR7280, Marseille, France; Max Planck Institute for Molecular Genetics, Department of Developmental Genetics, Berlin, Germany; Institute of Molecular Genetics of Montpellier (IGMM), UMR5535 CNRS, Montpellier, France; Cancer Science Institute of Singapore, National University of Singapore, Singapore; Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK; CHU Montpellier, INSERM U1203, Institute of Regenerative Medicine and Biotherapy, Montpellier, France
Pasha funding source(s)
Work in the JCA laboratory is supported by Centre National de la Recherche Scientifique (CNRS), Agence Nationale de la Recherche (ANR), Institut National du Cancer (INCa), and Commission of the European Communities.

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