PASHA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PASHA

Tool usage distribution map

This map represents all the scientific publications referring to PASHA per scientific context
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Associated diseases


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PASHA specifications


Unique identifier OMICS_00024
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available



  • person_outline Yongchao Liu

Publication for PASHA

PASHA citation


Palindromic Genes in the Linear Mitochondrial Genome of the Nonphotosynthetic Green Alga Polytomella magna

Genome Biol Evol
PMCID: 3787674
PMID: 23940100
DOI: 10.1093/gbe/evt122
call_split See protocol

[…] SA), using total DNA, isolated with the DNeasy Plant Mini Kit (Qiagen, MD, USA). The P. magna sequence data (∼5 Gb) were assembled de novo with Ray v1.2.1 (), using a k-mer of 21, and separately with PASHA (), using a k-mer of 31. The resulting Ray- and PASHA-generated contigs were independently scanned for mitochondrial sequences using BLAST and the P. capuana and P. parva mtDNAs as search querie […]

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PASHA institution(s)
School of Computer Engineering, Nanyang Technological University, Singapore; Institut für Informatik, Johannes Gutenberg University Mainz, Germany

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