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PASHA specifications


Unique identifier OMICS_00024
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Yongchao Liu <>

Publication for PASHA

PASHA citation


Palindromic Genes in the Linear Mitochondrial Genome of the Nonphotosynthetic Green Alga Polytomella magna

PMCID: 3787674
PMID: 23940100
DOI: 10.1093/gbe/evt122

[…] using total dna, isolated with the dneasy plant mini kit (qiagen, md, usa). the p. magna sequence data (∼5 gb) were assembled de novo with ray v1.2.1 (), using a k-mer of 21, and separately with pasha (), using a k-mer of 31. the resulting ray- and pasha-generated contigs were independently scanned for mitochondrial sequences using blast and the p. capuana and p. parva mtdnas as search […]

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PASHA institution(s)
School of Computer Engineering, Nanyang Technological University, Singapore; Institut für Informatik, Johannes Gutenberg University Mainz, Germany

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