PASTRI specifications

Information


Unique identifier OMICS_24116
Name PASTRI
Alternative name Probabilistic Algorithm for Somatic TRee Inference
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An allele counts file, and a proposal distribution file.
Output data A tree posterior, samples, labelled trees, frequency matrix, and some cluster assignments.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.1
Stability Stable
Requirements Numpy, Scipy
Maintained Yes

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Documentation


Maintainers


  • person_outline Benjamin Raphael <>
  • person_outline Gryte Satas <>

Publication for Probabilistic Algorithm for Somatic TRee Inference

PASTRI institution(s)
Department of Computer Science, Brown University, Providence, RI, USA; Department of Computer Science, Princeton University, Princeton, NJ, USA
PASTRI funding source(s)
Supported by a US National Science Foundation (NSF) CAREER Award (CCF-1053753) and US National Institutes of Health (NIH) grants R01HG005690, R01HG007069, and R01CA180776; by a Career Award at the Scientific Interface from the Burroughs Wellcome Fund, an Alfred P. Sloan Research Fellowship.

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