Patch-Surfer statistics

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Patch-Surfer specifications

Information


Unique identifier OMICS_13740
Name Patch-Surfer
Interface Web user interface
Restrictions to use None
Input data A protein structure file.
Input format PDB
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Daisuke Kihara <>

Publications for Patch-Surfer

Patch-Surfer in publications

 (2)
PMCID: 5005041
PMID: 26193243
DOI: 10.3390/molecules200712841

[…] overall (global) shape and physicochemical properties of a molecule []. 3dzd can be also used to describe local properties of a molecule by first segmenting surface into patches as introduced in patch-surfer [] and patch-surfer2.0 []. unlike methods that describe global properties of a molecule as a whole, which we call later as global property-based methods or global methods, patch-surfer […]

PMCID: 3686302
PMID: 23802014
DOI: 10.3389/fgene.2013.00118

[…] annotation. moreover, binding pocket prediction can be extended further to include additional downstream analyses, e.g., binding site comparison and mining. for example, pocket-surfer () and patch-surfer (,) identify ligand molecules that bind to predicted pockets by comparing their geometrical and physicochemical characteristics with a database of known binding pockets. these algorithms […]


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Patch-Surfer institution(s)
Department of Biological Science, Purdue University, West Lafayette, IN, USA; Department of Computer Science, Purdue University, West Lafayette, IN, USA
Patch-Surfer funding source(s)
This work was supported by the National Institutes of Health [R01GM097528]; National Science Foundation [IIS1319551, DBI1262189, IOS1127027]; National Research Foundation of Korea [NRF-2011- 220-C00004].

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