PatchDock specifications

Information


Unique identifier OMICS_03777
Name PatchDock
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Receptor protein and ligand protein
Input format PDB
Output data A list of candidate complexes between user specified receptor and ligand molecule. The geometric score, the desolvation energy, the interface area size and the actual rigid transformation of each candidate are shown.
Output format ZIP, PDB
Computer skills Basic
Version 1.3
Stability Beta
Maintained Yes

Documentation


Maintainer


  • person_outline Dina Schneidman-Duhovny <>

Information


Unique identifier OMICS_03777
Name PatchDock
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Receptor protein and ligand protein
Input format PDB
Output data A list of candidate complexes between user specified receptor and ligand molecule. The geometric score, the desolvation energy, the interface area size and the actual rigid transformation of each candidate are shown.
Output format ZIP, PDB
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Version 1.3
Stability Beta
Maintained Yes

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Documentation


Maintainer


  • person_outline Dina Schneidman-Duhovny <>

PatchDock articles

PatchDock institution(s)
School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel; Sackler Institute of Molecular Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Basic Research Program, SAIC-Frederick Inc., Laboratory of Experimental and Computational Biology NCI-Frederick, Frederick, MD, USA
PatchDock funding source(s)
This research has been supported by the Center of Excellence in Geometric Computing and its Applications funded by the Israel Science Foundation. It was also funded by the Hermann Minkowski-Minerva Center for Geometry at Tel Aviv University; the Eshkol Fellowship funded by the Israeli Ministry of Science; Federal funds from the National Cancer Institute, National Institutes of Health, under contract number NO1-CO-12400.

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