PatchDock specifications

Unique identifier:
OMICS_03777
Restrictions to use:
Academic or non-commercial use
Input format:
PDB
Output format:
ZIP, PDB
Version:
1.3
Maintained:
Yes
Interface:
Web user interface
Input data:
Receptor protein and ligand protein
Output data:
A list of candidate complexes between user specified receptor and ligand molecule. The geometric score, the desolvation energy, the interface area size and the actual rigid transformation of each candidate are shown.
Computer skills:
Basic
Stability:
Beta

PatchDock specifications

Unique identifier:
OMICS_03777
Interface:
Command line interface
Input data:
Receptor protein and ligand protein
Output data:
A list of candidate complexes between user specified receptor and ligand molecule. The geometric score, the desolvation energy, the interface area size and the actual rigid transformation of each candidate are shown.
Operating system:
Unix/Linux, Mac OS
Version:
1.3
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Input format:
PDB
Output format:
ZIP, PDB
Computer skills:
Advanced
Stability:
Beta

versioning

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PatchDock distribution

download

PatchDock support

Documentation

Maintainer

  • Dina Schneidman-Duhovny <>
  • Dina Schneidman-Duhovny <>

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Credits

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Publications

Institution(s)

School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv, Israel; Sackler Institute of Molecular Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Basic Research Program, SAIC-Frederick Inc., Laboratory of Experimental and Computational Biology NCI-Frederick, Frederick, MD, USA

Funding source(s)

This research has been supported by the Center of Excellence in Geometric Computing and its Applications funded by the Israel Science Foundation. It was also funded by the Hermann Minkowski-Minerva Center for Geometry at Tel Aviv University; the Eshkol Fellowship funded by the Israeli Ministry of Science; Federal funds from the National Cancer Institute, National Institutes of Health, under contract number NO1-CO-12400.

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