PathCORE specifications

Information


Unique identifier OMICS_19033
Name PathCORE
Interface Web user interface
Restrictions to use None
Input data A weight matrix, a gene signature definition and a list of pathway definitions.
Input format TSV
Output data A graphic with pathway-pathway connections from global gene expression patterns.
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Casey Greene <>

Additional information


https://pathcore-demo.herokuapp.com/ Demo: https://github.com/kathyxchen/PathCORE-demo

Information


Unique identifier OMICS_19033
Name PathCORE
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A table.
Input format TSV
Output data A graphic.
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Casey Greene <>

Additional information


https://pathcore-demo.herokuapp.com/ Demo: https://github.com/kathyxchen/PathCORE-demo

Publication for PathCORE

PathCORE institution(s)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Hanover, Germany; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, Germany
PathCORE funding source(s)
KMC was funded by an undergraduate research grant from the Penn Institute for Biomedical Informatics; Gordon and Betty Moore Foundation (GBMF 4552) and Cystic Fibrosis Foundation (STANTO15R0); R01-AI091702.

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