PathCORE specifications

Unique identifier:
OMICS_19033
Restrictions to use:
None
Input format:
TSV
Programming languages:
Python
Computer skills:
Basic
Stability:
Stable
Interface:
Web user interface
Input data:
A weight matrix, a gene signature definition and a list of pathway definitions.
Output data:
A graphic with pathway-pathway connections from global gene expression patterns.
License:
BSD 3-clause “New” or “Revised” License
Version:
1.0
Maintained:
Yes

PathCORE specifications

Unique identifier:
OMICS_19033
Interface:
Command line interface
Input data:
A table.
Output data:
A graphic.
License:
BSD 3-clause “New” or “Revised” License
Version:
1.0
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
TSV
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable

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PathCORE support

Maintainer

  • Casey Greene <>
  • Casey Greene <>

Additional information

https://pathcore-demo.herokuapp.com/ Demo: https://github.com/kathyxchen/PathCORE-demo

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Credits

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Publications

Institution(s)

Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Hanover, Germany; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, Germany

Funding source(s)

KMC was funded by an undergraduate research grant from the Penn Institute for Biomedical Informatics; Gordon and Betty Moore Foundation (GBMF 4552) and Cystic Fibrosis Foundation (STANTO15R0); R01-AI091702.

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