PathExpand protocols

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PathExpand specifications

Information


Unique identifier OMICS_06669
Name PathExpand
Interface Web user interface
Restrictions to use None
Programming languages PHP, R
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PathExpand

PathExpand in pipeline

2015
PMCID: 4665311
PMID: 26788135
DOI: 10.3892/ol.2015.3761

[…] (de) genes in pediatric all, which were identified using the rankprod package. enrichment analysis of the interaction network was performed using the network-based methods enrichnet and pathexpand, which were compared with the traditional expression analysis systematic explored (ease) method. in total, 398 de genes were identified in pediatric all, and lif was the most significantly […]


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PathExpand in publications

 (2)
PMCID: 4665311
PMID: 26788135
DOI: 10.3892/ol.2015.3761

[…] and topological methods. in the enrichment analysis, the traditional expression analysis systematic explored (ease) method of pathway analysis was compared with the network-based algorithm pathexpand., the microarray expression profiles of e-geod-26713 (), e-geod-34670 and e-geod-42221 were obtained from the array express database (european bioinformatics institute, wellcome trust […]

PMCID: 4313704
PMID: 25698928
DOI: 10.3389/fncel.2015.00014

[…] the enriched networks, we used the jepetto cytoscape application (winterhalter et al., ; http://apps.cytoscape.org/apps/jepetto), which interacts simultaneously with three servers, i.e., enrichnet, pathexpand, and topogsa. significantly over-represented go terms were selected if their xd score was greater than that calculated as the intercept of the linear regression of xd scores vs. […]


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PathExpand institution(s)
Nottingham University, UK

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