pathifier pipeline

pathifier specifications

Information


Unique identifier OMICS_16077
Name pathifier
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 0.12.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Assif Yitzhaky <>

pathifier IN pipelines

 (2)
2018
PMCID: 5928624
PMID: 29532879
DOI: 10.3892/mmr.2018.8722

[…] expression matrix of the prognosis-associated genes was converted into a pathway deregulation score (pds) matrix of the relevant pathways using the principal components analysis algorithm in the r pathifier package (bioconductor.org/packages/pathifier) (28). the optimal prognosis-associated pathways were screened subsequent to importing the pds matrix using the cox proportional hazards […]

2018
PMCID: 5928624
PMID: 29532879
DOI: 10.3892/mmr.2018.8722

[…] genes was converted into a pathway deregulation score (pds) matrix of the relevant pathways using the principal components analysis algorithm in the r pathifier package (bioconductor.org/packages/pathifier) (28). the optimal prognosis-associated pathways were screened subsequent to importing the pds matrix using the cox proportional hazards (cox-ph) model in the r penalized package […]

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