Protocols
PATHiWAYS specifications
Information
| Unique identifier | OMICS_07766 |
|---|---|
| Name | PATHiWAYS |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | Gene expression |
| Output data | Pathway activity |
| Programming languages | Java, Javascript |
| License | GNU General Public License version 2.0 |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Taxon
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Primates
- Homo sapiens
-
Rodents
- Mus musculus
Publications for PATHiWAYS
PATHiWAYS citations
(2)minepath.org: a free interactive pathway analysis web server
[…] nrichNet (), Paradigm () or the commercial Ingenuity Pathway Analysis IPA use such color-coding schemas for genes to highlight the differential power of the underlying molecular relations. GAM () and PATHiWAYS () visualize genes and the corresponding relations with the same color coding, which essentially suffers from the same drawback. PathAct () provides a relations color coding schema for simul […]
Using activation status of signaling pathways as mechanism based biomarkers to predict drug sensitivity
[…] ood agreement between the change of phosphorylation status of the proteins measured that belong to a circuit selected by the predictor and the change in signaling obtained upon the application of the Pathiways tool for this circuit. Some apparent contradictions can easily be explained by the topology of the circuits. For example, in the case of insulin signaling pathway, PDPK1 shows a dephosphoryl […]
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