PATHiWAYS specifications


Unique identifier OMICS_07766
Interface Web user interface
Restrictions to use None
Input data Gene expression
Output data Pathway activity
Programming languages Java, Javascript
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Publications for PATHiWAYS

PATHiWAYS citations

library_books a free interactive pathway analysis web server

Nucleic Acids Res
PMCID: 5570234
PMID: 28431175
DOI: 10.1093/nar/gkx278

[…] nrichNet (), Paradigm () or the commercial Ingenuity Pathway Analysis IPA use such color-coding schemas for genes to highlight the differential power of the underlying molecular relations. GAM () and PATHiWAYS () visualize genes and the corresponding relations with the same color coding, which essentially suffers from the same drawback. PathAct () provides a relations color coding schema for simul […]


Using activation status of signaling pathways as mechanism based biomarkers to predict drug sensitivity

Sci Rep
PMCID: 4683444
PMID: 26678097
DOI: 10.1038/srep18494
call_split See protocol

[…] ood agreement between the change of phosphorylation status of the proteins measured that belong to a circuit selected by the predictor and the change in signaling obtained upon the application of the Pathiways tool for this circuit. Some apparent contradictions can easily be explained by the topology of the circuits. For example, in the case of insulin signaling pathway, PDPK1 shows a dephosphoryl […]

PATHiWAYS institution(s)
Computational Genomics Department, CIPF, Valencia, Spain

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