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Pathline specifications


Unique identifier OMICS_17707
Name Pathline
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes



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Publication for Pathline

Pathline in publications

PMCID: 5833126
PMID: 29499706
DOI: 10.1186/s12968-018-0432-4

[…] aortic and mitral valves and the lv size in the long and short axis images. the segmentation at ed is resampled to give a volume with isotropic voxels equal to the size of the flow data voxels. a pathline is emitted from the centre of each voxel included in the lv segmentation. pathlines are created forwards and backwards in time until the preceding or subsequent es, respectively. a pathline […]

PMCID: 5678712
PMID: 29117252
DOI: 10.1371/journal.pone.0187596

[…] a close to steady state condition of the longitudinal magnetization and hence to overcome steady state artifacts. imaging parameters were optimized to provide high spatial and temporal resolution. pathline visualizations were generated from the acquired velocity data in order to display complex flow patterns., our setup allows data acquisition with at least two times the rate […]

PMCID: 5644225
PMID: 29051857
DOI: 10.1002/advs.201700153

[…] results from this study show that the streak width is essentially the same as the particle diameter at low particle concentrations, strongly indicating that the suspension flows single file along a pathline. the ability to truly focus particles in a curved channel network depends strongly on two quantities, the flow rate and channel cross‐section dimensions. as indicated above, the reynolds […]

PMCID: 5356404
PMID: 28302143
DOI: 10.1186/s12968-017-0345-7

[…] was used to mask the velocity field for the generation of time-resolved 3d pathlines to visualize aortic 3d blood flow (ensight, cei, apex, nc). semiquantitative aortic flow pattern analysis using pathline movies was performed in mfs patients and healthy subjects in a blinded fashion and random order by two observers (cr and jr). a helical flow pattern was defined as rotational fluid motion […]

PMCID: 5351861
PMID: 28296953
DOI: 10.1371/journal.pone.0173680

[…] particle at every time step. the vector ξ¯=(x1,x2,⋯,xp), where xi∈r3 (i = (1, 2, ⋯, p)) is the unknown position of the i-th particle, identified the drug distribution. we determined the particle pathline by integration of the following ordinary differential equation: {dxidt=u(xi,t),i=(1,2,⋯,p),xi(t0)=xi0,(2) which represents the advective transport coupled with a specific initial condition. […]

Pathline institution(s)
Harvard University, USA; Broad Institute, USA; Georgia Institute of Technology, USA; University of British Columbia, Canada
Pathline funding source(s)
This work was supported by the Data Visualization Initiative at the Broad Institute, and by the National Science Foundation under Grant 0937060 to the Computing Research Association for the CIFellows Project.

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