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A comprehensive relational database of all the reported pathogenicity islands (PAIs) and potential PAI regions which were predicted by a method that combines feature-based analysis and similarity-based analysis. PAIDB v2.0 contains 223 types of PAIs with 1331 accessions, and 88 types of REIs with 108 accessions. With an improved detection scheme, 2673 prokaryotic genomes were analyzed to locate candidate PAIs and REIs. With additional quantitative and qualitative advancements in database content and detection accuracy, PAIDB will continue to facilitate pathogenomic studies of both pathogenic and non-pathogenic organisms.

Restrictions to use:
PAIDB version 2.0
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  • (Yoon et al., 2015) PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands. Nucleic acids research.
    PMID: 25336619
  • (Yoon et al., 2007) Towards pathogenomics: a web-based resource for pathogenicity islands. Nucleic acids research.
    PMID: 17090594
  • Eubacteria

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