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PathoQC

Pre-processes next-generation sequencing (NGS) data. PathoQC is based on several of the most used quality control software approaches and combines their benefits to offer a variety of quality control options. It can be useful for most high-throughput sequencing applications. The tool supports parallel computation. It facilitates robust downstream analysis and removes technical sequencing artifacts. PathoQC is available as a part of PathoScope.

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PathoQC versioning

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PathoQC classification

PathoQC specifications

Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, FASTQ
Programming languages:
Python
Version:
0.1.4
Interface:
Command line interface
Input data:
A read sequencing data.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

PathoQC support

Maintainer

  • Changjin Hong <>

Additional information

Tuto: http://sourceforge.net/projects/pathoscope/files/pathoscope2.0_v0.02_tutorial.pdf Wiki: http://sourceforge.net/p/pathoscope/wiki/Home/

Credits

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Publications

Institution(s)

Division of Computational Biomedicine, Boston University School of Medicine, Boston, MA, USA; Cytogenetics/Molecular Genetics Laboratory, Nationwide Children’s Hospital, Columbus, OH, USA

Funding source(s)

Supported by a grant from the National Institutes of Health (R01 HG005692).

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