PathSeq specifications


Unique identifier OMICS_00221
Name PathSeq
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, Python
Parallelization MapReduce
Computer skills Advanced
Version 2.0
Stability Stable
High performance computing Yes
Maintained Yes


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  • person_outline Matthew Meyerson <>

PathSeq article

PathSeq institution(s)
Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA, USA; Department of Pathology, Harvard Medical School, Boston, MA, USA; Department of Medical Oncology and Center for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, MA, USA
PathSeq funding source(s)
Supported by the National Cancer Institute (RC2CA148317), the Starr Cancer Consortium, the Claudia Adams Barr Program in Innovative Cancer Research, a Natural Sciences and Engineering Research Council of Canada Postgraduate Scholarship, and the Rebecca Ridley Kry Fellowship of the Damon Runyon Cancer Research Foundation.

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