Pathway-Express pipeline

Pathway-Express specifications


Unique identifier OMICS_18291
Name Pathway-Express
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Registration required Yes
Maintained Yes


  • person_outline Sorin Draghici <>

Additional information

Publications for Pathway-Express

Pathway-Express citations

PMCID: 5440822

[…] experimental variation or batch effect for each gene independently. expression values were transformed in log2, and probesets were mapped using the entrez gene probeset definition58. the pathway-express tool from the onto-tools ( was used to assess biological processes and pathways affected at different stages of er+ breast tumour samples. genes encoding […]

PMCID: 4825658

[…] gse71813., yeast strain by4741, transformed with a reporter cassette (yas38) expressing fus1-gfp, serves as the wild-type control for these experiments. wild-type yeast cells with an intact mating pathway express low but detectable basal levels of pfus1-gfp (gfpbasal), and exhibit a significant increase in gfp expression upon induction with α-factor (to gfp+ levels), as expected (figure 1). […]

PMCID: 2725284

[…] (st. louis, mo) software packages., gene annotations and specific pathways were fingered out using online free access programs such as: go annotation (, onto-express, pathway-express (intelligent systems and bioinformatics laboratory, computer science department, wayne state university)., total rna from specimens analyzed for bcar1, vil2 and dcn expression […]

PMCID: 2227948

[…] 9017, 9018, 9023 and 8921a, respectively. onto-express analyses depicted in figure 4 shows that transcription factor binding is a highly significant component in our microarray data. results from pathway-express analysis are listed in table 4, and these show that immune function and neurospecific pathways are also highly implicated in this data set., we selected a subset of genes […]

Pathway-Express institution(s)
Karmanos Cancer Institute, Wayne State University, Detroit, MI, USA; Department of Computer Science, Wayne State University, Detroit, MI, USA; Perinatology Research Branch, NIH/NICHD, Detroit, MI, USA
Pathway-Express funding source(s)
Supported by the following grants: NSF DBI-0234806, CCF-0438970, 1R01HG003491-01A1, 1U01CA117478-01, 1R21CA100740-01, 1R01NS045207-01, 5R21EB000990-03, 2P30 CA022453-24.

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