Pathway-Express specifications

Information


Unique identifier OMICS_18291
Name Pathway-Express
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Registration required Yes
Maintained Yes

Maintainer


  • person_outline Sorin Draghici <>

Additional information


http://vortex.cs.wayne.edu/faq.htm#pathwayexpressfaq

Pathway-Express articles

Pathway-Express citations

 (3)
2016
PMCID: 4825658

[…] gse71813., yeast strain by4741, transformed with a reporter cassette (yas38) expressing fus1-gfp, serves as the wild-type control for these experiments. wild-type yeast cells with an intact mating pathway express low but detectable basal levels of pfus1-gfp (gfpbasal), and exhibit a significant increase in gfp expression upon induction with α-factor (to gfp+ levels), as expected (figure 1). […]

2010
PMCID: 2951363

[…] www.babelomics.org) to indentify functional enrichment by comparing the two lists of differentially regulated genes from endometrium and blood by means of a fisher's exact test [54]. furthermore, pathway express (http://vortex.cs.wayne.edu/ontoexpress) was used to identify relevant pathways represented by the differentially regulated gene set. pathway express calculates a probability (p) […]

2008
PMCID: 2227948

[…] 9017, 9018, 9023 and 8921a, respectively. onto-express analyses depicted in figure 4 shows that transcription factor binding is a highly significant component in our microarray data. results from pathway-express analysis are listed in table 4, and these show that immune function and neurospecific pathways are also highly implicated in this data set., we selected a subset of genes […]

Pathway-Express institution(s)
Karmanos Cancer Institute, Wayne State University, Detroit, MI, USA; Department of Computer Science, Wayne State University, Detroit, MI, USA; Perinatology Research Branch, NIH/NICHD, Detroit, MI, USA
Pathway-Express funding source(s)
Supported by the following grants: NSF DBI-0234806, CCF-0438970, 1R01HG003491-01A1, 1U01CA117478-01, 1R21CA100740-01, 1R01NS045207-01, 5R21EB000990-03, 2P30 CA022453-24.

Pathway-Express reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Pathway-Express