Finds patterns of expression in complex RNAseq experiments. PI combines two standard approaches for RNAseq analysis: the identification of differentially expressed genes and a topology-based analysis of enriched pathways. This software is designed to perform several comparisons in one run, such as samples coming from different tissues in two conditions (e.g. roots, leaves, and/or plant body in optimal conditions versus water stress). It also assists the discovery of modulated pathways for every sequenced organism.
Research and Innovation Center, Edmund Mach Foundation, San Michele all’Adige, Italy; Department of Molecular Medicine, University of Padova, Padova, Italy; Department of Biology, University of Padova, Padova, Italy