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Pathway interactive visualization tooL PiiL

Online

Allows direct comparison and testing specific hypotheses in model organisms for which pathway and expression network data exists. PiiL is an integrated DNAm and expression pathway browser. It was designed to explore and understand the effect of DNAm operating on individual CpG sites on overall expression patterns and transcriptional networks. It implements a multi-level paradigm, which allows examining global changes in expression, comparisons between multiple sample groupings, play-back of time series.

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PiiL versioning

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PiiL classification

PiiL specifications

Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Medium
Stability:
Stable
Maintained:
Yes
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
0.14

PiiL support

Maintainer

  • Manfred Grabherr <>

Credits

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Publications

Institution(s)

Biology, Uppsala University, Uppsala, Sweden; Department of Medical Biochemistry and Microbiology/BILS, Genomics, Uppsala University, Uppsala, Sweden; Department of Plant Physiology, Umeå University, Umeå, Sweden; Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland

Funding source(s)

Supported by a FORMAS grant, an eSSENCE grant and in part by a grant from the Polish National Science Centre [DEC-2015/16/W/NZ2/00314].

Link to literature

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