PAPRICA specifications

Unique identifier:
OMICS_10562
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
Predicted metabolic pathways, taxonomic assignment, additional estimated parameters for genome
Programming languages:
Python, Shell (Bash)
Version:
0.20
Requirements:
Pandas, infernal, pplacer, seqmagick
Name:
PAthway PRediction by phylogenetIC plAcement
Interface:
Command line interface
Input data:
16S rRNA gene reads
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Stability:
Beta
Maintained:
Yes
  • Archaebacteria
  • Eubacteria

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PAPRICA support

Documentation

Maintainer

  • Jeff S. Bowman <>

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Publications

Institution(s)

Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, USA

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