Paradigm specifications

Information


Unique identifier OMICS_08336
Name Paradigm
Alternative name PAthway Representation and Analysis by Direct Reference on Graphical Models
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements libdai
Maintained Yes

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Paradigm articles

Paradigm institution(s)
Howard Hughes Medical Institute and Department of Biomolecular Engineering and Center for Biomolecular Science and Engineering, UC Santa Cruz, CA, USA

Paradigm review

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Martin Abba

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Desktop
Powerful and easy-to-use pathway-based analysis tool developed by Five3 Genomics. The normalized gene expression profiles (e.g.: edgeR log 2 counts per million values) can be employed to identify the top most variable IPAs (integrated pathway activities) among a set of samples.